10. Start search container
Starting with version 19.05 which runs Ensembl release 93, it is necessary to start an additional container to run searches against the Ensembl database.
We anticipate adding functionality to search across additional GenomeHubs resources in future releases.
$ docker run -d \
--name genomehubs-search \
--network genomehubs-network \
-p 8884:8080 \
genomehubs/search:19.05
Optionally add a custom apache configuration file to override defaults
mkdir -p ~/genomehubs/v1/search/conf
nano ~/genomehubs/v1/search/conf/search.genomehubs.org.conf
~/genomehubs/v1/search/conf/search.genomehubs.org.conf:
Listen 8080
<VirtualHost *:8080>
RewriteEngine on
RewriteRule "^/lbsearch$" "/cgi-bin/lbsearch" [PT]
RewriteRule "^/autocomplete$" "/cgi-bin/autocomplete" [PT]
ServerAdmin [email protected]
ServerName search.genomehubs.org
ServerAlias search.genomehubs.org
DocumentRoot /var/www/search.genomehubs.org/httpdocs
ErrorLog /var/www/search.genomehubs.org/logs/error.log
CustomLog /var/www/search.genomehubs.org/logs/access.log combined
ScriptAlias "/cgi-bin/" "/var/www/search.genomehubs.org/cgi-bin/"
<Directory "/var/www/search.genomehubs.org/cgi-bin/">
Options +ExecCGI
SetHandler cgi-script
</Directory>
</VirtualHost>
$ docker run -d \
--name genomehubs-search \
-v ~/genomehubs/v1/search/conf:/conf:ro \
--network genomehubs-network \
-p 8884:8080 \
genomehubs/search:19.05
- Earlier
19.05
container versions contained a search bug, if you are having trouble with search please pull the updatedeasy-mirror
andsearch
container images:docker pull genomehubs/easy-mirror:19.05
docker pull genomehubs/search:19.05
- This container must be named
genomehubs-search
and be made available on the same docker network as thegenomehubs-ensembl
container for the search configuration to work.
Last modified 2yr ago