172.17.0.0network) allow access to the MySQL container from any linked container on the same host.
docker exec -it genomehubs-mysql bashthen logging in to mysql as root, or by updating the settings in
ensembl/conf/database.iniand re-running the
database.shscript in the EasyMirror container (described here), which will add new users without re-downloading the databases.
ensembl/conf/database.inito match the overlay network and netmask (probably
192.168.0.0/255.255.255.0) when adding users and connect to the mysql server by setting the database host to the IP of the server running the MySQL docker container. The example commands map port 3306 on the MySQL container to port 3306 on the host so you will be able to connect directly to the Docker container via the host IP. You will no longer need to link the MySQL container to the EasyMirror and EasyImport containers when running them in this way.
/dbsin order to format the BLAST databases. If you would prefer to run SequenceServer with read-only access to this directory, you can pre-format the databases using the SequenceServer container without running the BLAST server using a command similar to the following: