GenomeHubs
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GenomeHubs
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Introduction
Introduction
GenomeHubs
Files and containers
Demo
Quick Start
1. Prepare
2. Setup MySQL database server
(optional) Test Ensembl browser
3. Import assembly and gene models
4. Export files
5. Run analyses
6. Import analysis results
7. Update meta
8. Start download site
9. Start BLAST server
10. Start search container
11. Edit Ensembl plugin
12. Start Ensembl browser
Next Steps
Setup with multiple hosts
Understand the GFF parser
Import additional assemblies
Run comparative analyses
Import variation data
Add track hubs
Connect using Perl API
Set up REST API
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Set up REST API
Ensembl also offers a REST API to allow programmatic access with the language of your choice. We will be offering a REST API container as part of GenomeHubs soon.
Next Steps - Previous
Connect using Perl API
Last modified
2yr ago
